Scaffold Ga0209384_1000196

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1000196
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42006
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (65.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F004166	Metagenome / Metatranscriptome	450	N
F006870	Metagenome / Metatranscriptome	363	Y
F007087	Metagenome / Metatranscriptome	358	N
F076523	Metagenome	118	N
F086197	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_100019613	F006870	N/A	MKKMSQILLLALSLVLMNKASSVETKLSPQGSDKYNVYIKGDAQSNEKKLRDIFQSKVNEICGTRFEIISIKMDQINKVGSKKNVLNGIFKCFVNSQM
Ga0209384_100019614	F007087	AGG	MKKLLLIALTIPNFVLAEDFKLVCEGEESTFRNDVLENTSKATKSLQVKDDSIVIDSMTYKSKKFDYGAIKGSSKYVKDDAQIIIETTQVSNECDTALLSVKLNRSSGMIESTSKRIGACDGSSFTTSSKFIGNCK
Ga0209384_100019616	F002915	AGG	MKKLLLLLLTIPILGQSKEIFMNDQGLEIQYDKPSISCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICGDKSMVEKLEKKSKGS
Ga0209384_100019617	F004166	AGTAGG	MKKLFLLILLVPLISCSDHQTNNSWGSYATNKETQKQEFWFTSYKTRGECEADMYWQLEGEEDDSKKRISNWHKKPYGCHFMSNNKWLSMYYYLIYKDENLGCLWESSNPNVQIKYSVTLKSFKNVLEQGRCILGD
Ga0209384_100019637	F086197	N/A	MKTKYNHSESGMVLVITLILILTLTILASSVFMSVNRYTETIDNISYRPQAMEAANSCIDQALDWLATSDGTNWRDGDTPIDLAAESNALNKKTVLEDTTMEGITRDDMFSVMLEKSSCTRVLITKVSSEASRGEGGGGEIGSETSYGSSVLKYVFKIEARGVFNVPLNSSGTAIKFDNWNTTSNVVDLEVHVGFSPT
Ga0209384_100019641	F076523	GAG	MINLKITIFVLCIISALNIKAENKFETLCWDAMADMTIYMTSYGSTEEINDAEVYRWVDDNYVYQPLKTFLKRKWLPTLKTNEDFTLNNVYVMKDKYLSSCVAAIS