Scaffold Ga0209384

Basic Information
Taxon OID	3300027522 Open in IMG/M
Scaffold ID	Ga0209384_1000043 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027522 Open in IMG/M

Scaffold ID

Ga0209384_1000043 Open in IMG/M

Source Dataset Name

Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	88876
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (47.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

88876

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (47.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: West Antarctic Peninsula

Coordinates

Lat. (^o)

-64.8156

Long. (^o)

-64.0406

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005012	Metagenome / Metatranscriptome	415	Y
F006003	Metagenome / Metatranscriptome	384	N
F007392	Metagenome / Metatranscriptome	352	Y
F012576	Metagenome / Metatranscriptome	279	Y
F025396	Metagenome / Metatranscriptome	202	N
F025596	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_100004314	F025396	AGGA	MRLDEKKFQTGEIPQKIQHILLNFGEKQKIGISEYLRTFNQCSLRSITEHIDETSLSEIKRYLSCYLIHSKNKKVIITSGQII
Ga0209384_100004319	F025596	N/A	MSKYTNTLVNLSYIFGMAILIIGLVDRKIRFMDVSDAQWIILSLVLGIFFPILLNVLFFKKFSIHFWNKFN
Ga0209384_100004363	F012576	N/A	MNTLLAYIQFIFIGFVIYGSVLTFGETSVNTSTSGIVAPILAWFAGTGLRASFNSESNNQKKGSIFMAVILLALSYLWINSTGYWYIASEIEISGKNLLVISFFIGFLSTVKKISEINKN
Ga0209384_100004364	F005012	AGG	MKTILISLLLLSSLSLADNLKLLCKGEEIKYLEDNPDSNEVIKKVIRIQLYQEGMRLDGEWFDNKSDLTEDYFLKRNYVKSKDNISGARNFSTNSLIEGREIKTVKIDKVEINILTNNIFWKHEFNRVDVTDAEANVIYAFRKNFKGTCK
Ga0209384_100004365	F007392	N/A	MIFCSFANGEEFTLICEGERTVRSFTSKELNDLDFESVLLKIKKNSMEYIGVNSGRSYIFSNKEYTAPKKPPHEDIKIKEHYEFTPRTIKASQVITDTGNSEASSISRFILNIDRLTGKLNEIESISNKKTLQKSISNNFQALCKREDSPY
Ga0209384_100004389	F006003	GAG	MKKKNLIKHYFALVTMLFVVSGSFVSNVMAADFDYQVICSGNTVKLLALSDEGNDNSISNTLTNCSFCNLGEDEDFYTSLSIIETFAGKSPTLKKVYLSFISNKIASNFYSQAPPHFS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209384_1000043

Overview

Ecosystem & Geography

Associated Families

Sequences