Scaffold Ga0209384_1000004

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1000004
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 171195
• Total Scaffold Genes: 180
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (53.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012817	Metagenome / Metatranscriptome	277	N
F017732	Metagenome / Metatranscriptome	239	N
F043633	Metagenome / Metatranscriptome	156	N
F044162	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_1000004143	F043633	N/A	MDFRKVILNFFTLLNTVYLGLMIYIEFFMVNLTKDPYEIYYDLWLYVFVGYCAILIFNFAMFGKVTLWNLKLKK
Ga0209384_1000004147	F044162	AGGA	MLKKIILLIIIGAIGWYVYNNYMKSEVDKAIDTAEDAVDEVEDAVDDM
Ga0209384_1000004175	F012817	N/A	MNVYLIALLSLSGFYAFNYFQILNMDGWEMFDKYATENEKEKKENLADQMLEANGNSDQQEVERLGMEYKNIYIEVRNKAKKEFWDHKKNNWKMASFIIGLLFVVNYLLSGRITLFHKSN
Ga0209384_100000485	F017732	N/A	MVGCASKEYSIDDLFEDGGEIDTTPENSLKYVCNQKKYFFVRYIGDDKKSLWIIFPKREIKLDQTEISNVFSNGITKLIFNEKTTTVKKEDSILYSECSSEIE