Scaffold Ga0209562_1034935

Overview

Basic Information

• Taxon OID: 3300027519
• Scaffold ID: Ga0209562_1034935
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3073
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Germany: Marburg
• Coordinates
  • Lat. (^o): 50.8
  • Long. (^o): 8.81

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005172	Metagenome	409	Y
F030587	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209562_10349353	F005172	GGA	VDVFWDTVYIDIPVLYTVPKSDAKIEITITTTNLIRIIYPLSSFNYRSSGANIENFNKIHRIVLEQQLFYKWYSKTEVSNMEKSL
Ga0209562_10349354	F030587	N/A	MVFTKKDGILIKVLRQSKGYSARKLLEEFPDKDWSCSALDRLLRQIDATGSADRKFSSSREHTVCTRDMQVSVQMATTLSTNCN
Ga0209562_10349355	F005172	N/A	VIYTVFQKSDSKIQITITTAHLIRINYPLSSFNYRLSGTNLANFNKIYSKVSEQQLFKKWNLKTEFSNMENTN