Scaffold Ga0209562_1028938

Overview

Basic Information

• Taxon OID: 3300027519
• Scaffold ID: Ga0209562_1028938
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3361
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Hemichordata → Enteropneusta → Harrimaniidae → Saccoglossus → Saccoglossus kowalevskii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Germany: Marburg
• Coordinates
  • Lat. (^o): 50.8
  • Long. (^o): 8.81

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001963	Metagenome	610	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209562_10289381	F001963	AGGCGG	VTQLRDVVYVVCAGSSTITRFNATTHQPLTGINVKDLRRPFDIVACEGTSQLYVAAELKCVWRVSSDDTDIKRWLQKSPDDTFQPFKLSVTSTRLLVTSRDTHQLRQFDADGDELRRVQLPDHMEPYHAVESPTGTFIVSLHSTQLKHDQVAEVNPGGEVLRQFSCSSRLTPLGVTEHVAVDSHGNIFVADCDNRHILLLDNHLSLRRIIVDEHQLNYKQPLRLCYREDKGQLLVALYHGVAVFDVICR