Scaffold Ga0209562_1020042

Overview

Basic Information

• Taxon OID: 3300027519
• Scaffold ID: Ga0209562_1020042
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3942
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Germany: Marburg
• Coordinates
  • Lat. (^o): 50.8
  • Long. (^o): 8.81

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005172	Metagenome	409	Y
F030587	Metagenome	185	Y
F067391	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209562_10200422	F067391	N/A	MAHLIRINYSLSSFNCRLSGTNVANFNKIHHMVSEQQILKKWNSKTEFSNMENTD
Ga0209562_10200423	F030587	N/A	MVFTKEYGILIKVLRQSNSYSARKLLEEFPDKDWSYSALDQLLRQIDATGSADRKSGSSRERTVCTRDMQMSVQMATTLSTNCN
Ga0209562_10200424	F005172	GGAGG	MATNCETTVCSKKSDAKIEIIITATNLIRIKYPLSIFNYHLSGANFANFNKIHCTVFEQQLFEKWNSKTEVSNMKKWPS