Scaffold Ga0209562_1019309

Overview

Basic Information

• Taxon OID: 3300027519
• Scaffold ID: Ga0209562_1019309
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4005
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Germany: Marburg
• Coordinates
  • Lat. (^o): 50.8
  • Long. (^o): 8.81

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000027	Metagenome	5489	Y
F005172	Metagenome	409	Y
F030587	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209562_10193091	F030587	GAGG	MLIKVLRQSKGYSARKLLEEFPDKDLSCSALDQLLRQIDTTGSTDRKSGSSRERTVCTRDMQVSVENGDHFEHKL
Ga0209562_10193092	F005172	N/A	VFQKSDAKIQITITTAYFIRISLPLNNFNYRLSGTDFTNLNKIHCMVSEQQLLKKWNLKTEFSNMENTD
Ga0209562_10193094	F000027	AGGA	MSFRLVGLPNSVTLDDLERRNSPKRSVISPNSVAFGADYIKVVEDIKYINTFCS