Basic Information | |
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Taxon OID | 3300027519 Open in IMG/M |
Scaffold ID | Ga0209562_1016141 Open in IMG/M |
Source Dataset Name | Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4301 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Marburg | |||||||
Coordinates | Lat. (o) | 50.8 | Long. (o) | 8.81 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000296 | Metagenome | 1348 | Y |
F005172 | Metagenome | 409 | Y |
F030587 | Metagenome | 185 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209562_10161411 | F000296 | N/A | ELFSLGRTAEALRAIIGSKSAISLQRGPVDPKFQVEGVAPHQTFFFSEN |
Ga0209562_10161413 | F005172 | N/A | VFQKKSDAKIQITITTAHIIRINYPLSSFIFRLSGTNVANFNKIHHIVSEQQLFKKWNLKTEFSNMENTN |
Ga0209562_10161414 | F030587 | N/A | MVFTKEDGILIKVLRQSKGYSARKLLEEFPYKDWSCSALDRLLRQIDATCGSADRKSGSSRERTVCTRDMRMSVQMATTLSTNCN |
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