Scaffold Ga0208787_1040147

Overview

Basic Information

• Taxon OID: 3300027518
• Scaffold ID: Ga0208787_1040147
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1369
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F013404	Metagenome	271	Y
F085108	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208787_10401473	F003803	AGGAG	MKKDKTLLRFRIYDGDREYTDYAIIDNKQLLTLNYKEIISKFFYDDKVNDEQFLSDGRAVRIESEIPITNEDAKKLESFSMAFLHDFKLKEIA
Ga0208787_10401475	F013404	AGGAGG	MATIIDAVKKLDETIARQKSIANKLVEEHKQLQEALAIVCSNADEDCPLEYRTEHFKSAITDGYDLLKKVGYFKNKKRVNKWDI
Ga0208787_10401477	F085108	N/A	MENNREVGVSIPDTDMHIGDLYEETLEKYSSGQLKKDGLIMLPEEALQYFINKAREEGFTDN