NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208787_1006910

Scaffold Ga0208787_1006910


Overview

Basic Information
Taxon OID3300027518 Open in IMG/M
Scaffold IDGa0208787_1006910 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4176
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013404Metagenome271Y
F050215Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0208787_10069103F050215AGGAMGTLQLVKEIKTKSDSDFRAVTELNSLVSDVEKKYVKDILIQLKDTFTKLKIKYLVGEFSGGHDEGGFDSAYFADEKGEAITIPEEEKISFMKWVDMDIIYNFENAKQKKTTFYSTTTNKRINVLEELEDMLYKAGCLEEYGSFAGDFRVNGTVKLDVFTYGWEMDGNQSVEQYETVSDMGEL
Ga0208787_10069109F013404N/AMLISYQNVLKLTLTIINMTITITDAVKKLDETIARQKSIANKLVEEHKQLQEALAIVCSNADEDCPLEYRTEHFRSAITDGYDLLKKVGYFKNKKRVNKWDI

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