NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208787_1004819

Scaffold Ga0208787_1004819


Overview

Basic Information
Taxon OID3300027518 Open in IMG/M
Scaffold IDGa0208787_1004819 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5163
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007570Metagenome348Y
F031076Metagenome183Y
F050211Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0208787_100481916F031076GAGMKAVVIVMCLFLFGCFGAELFKLGGIGIKTGDVITVPHKIETLTKDKK
Ga0208787_10048195F007570GGAGGMKEDITYIKQYLKTFNDRRLKEEYSLYTSLKKPTILENYFKDFIKRELDTRGIGV
Ga0208787_10048196F050211AGGGGGMIEYTNINVFDVSFCLQDDDGNTLEDKNGKPKLFRYKDDINAPFDYIQSITEGTELSMLEEIK

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