Scaffold Ga0208787_1000098

Overview

Basic Information

• Taxon OID: 3300027518
• Scaffold ID: Ga0208787_1000098
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40284
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (69.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005175	Metagenome / Metatranscriptome	409	Y
F006218	Metagenome / Metatranscriptome	378	Y
F011150	Metagenome / Metatranscriptome	294	Y
F088500	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208787_100009821	F006218	N/A	MCGKEHMSNEGGWVINAERFNFCHSLEHSCYEIYFNNVRAKEKQSSVINNNNDKRMEMYIEYLKKQKCKHKYQGEM
Ga0208787_100009830	F011150	N/A	MDINYYQKQHDKIKQQFRHDIIMRKLKEKEDKEFRNMFTKIFLIIVIAILLLTIIANRXNLY
Ga0208787_100009836	F005175	AGG	MIDQPLHVEDVIDMYNEKIIILKKEIDRLNEEIQVLHIELMQERAKNNDXFKEQRI
Ga0208787_10000984	F088500	AGG	MKKIVNGIEIELTQEEISQRQIDEEKAEQDRLARIVKKETELANKQSALNKLKALGLNEAEINSILGK