Scaffold Ga0209162_1007742

Overview

Basic Information

• Taxon OID: 3300027515
• Scaffold ID: Ga0209162_1007742
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6624
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F006252	Metagenome / Metatranscriptome	377	Y
F025895	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209162_10077421	F025895	GGAGG	MSDAIAWIIAFGVIFALVNSNAADGILSALDLSDNLKRAVDWARGVRGVPAGVSAACFFILAYVFGALAYRYDLVPTWRFIQPVANDVLATGAEWLTLFALFLTLLPTLIELASVGLVQRDIRALQYMVYFFVFFDLVTDHAEAVALVNVWRSGGLFTPLPDALENAATVLAQIGWTFAASFAFEFLAILFAVTGLLLAA
Ga0209162_10077426	F004307	AGGA	MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEVEDHELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGVPQMTDEQLANAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF
Ga0209162_10077429	F006252	AGGA	MRSFEEQAAFGLPYERAIAQTAALLLYPHRPDLALARLDAYAPLDYLLLDGKKPAAALEVKRRSVRSDAYRTTILPDSVYVAAKRLTIPAFAAILFTDGLCIFDVVRTPSTVRWLRDRRGRARKHREYVVTERIIRCEAVHQ