Scaffold Ga0208338_1000044

Overview

Basic Information

• Taxon OID: 3300027514
• Scaffold ID: Ga0208338_1000044
• Source Dataset Name: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59469
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (78.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location

• Location Name: Browns Valley, California, USA
• Coordinates
  • Lat. (^o): 39.23550963
  • Long. (^o): -121.2836963

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026703	Metagenome	197	Y
F045815	Metagenome / Metatranscriptome	152	Y
F081403	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208338_100004430	F081403	AGGAG	MNPRKNTFLILLLGLLLVAFSAVTAQTPSQGEQKNKTESCCQTDSCCTDDSCDMKKEGEANSEGKHDCCGESCDMKKHDAKMKHDKDAKGECCNSMKSKKNKKVT
Ga0208338_100004431	F045815	AGTAG	MDLFSNKAVRLLLAVSVSIWMAGGCMFGCANAPAQSREQVIDAGISCHAKHSHVAGMPSFVPSLRETMSECPLVVNATAVTSKNSTHVPDPGRGPIAALPSFEKQIAYTDNLLVAPLRPARGPTHLRCCVFLI
Ga0208338_100004444	F026703	GGAG	MILRLVAVCVVLLIVNACRSQNESLTSPTPSPDTIVSSTPPFQTKEPERYSAVRTITSVNAEGQTLVTKTSVARDGDLRRHESTSVAKTIVYLDVREGKFVLLPVEKVYADVTDESQISADKTEEGLESSPDALVHTDGGATSYQKLGNEVIAGRNTNKYRIVVNSPAPANVSQSETLMWIDEALQMPIRSETKSDGTKVTMEISEIKLEVDKSLFAIPQGYQKVTFNELRKRLTAGASASS