Scaffold Ga0208338_1000010

Overview

Basic Information

• Taxon OID: 3300027514
• Scaffold ID: Ga0208338_1000010
• Source Dataset Name: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103680
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (68.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location

• Location Name: Browns Valley, California, USA
• Coordinates
  • Lat. (^o): 39.23550963
  • Long. (^o): -121.2836963

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001316	Metagenome / Metatranscriptome	724	Y
F012503	Metagenome	280	Y
F104945	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208338_100001037	F104945	GGAGG	MPPDVKKVKALQLNLEGLLRLLGGSSADKQKFLEMIIGITTPIEVKLINAQIEALSAHTKAVQGAAKSLQATAQQIAKRG
Ga0208338_100001069	F001316	N/A	MKALLLIVGILVATAGGVITYRALYVEPKSGVVITDTGIRQIPNQARVVGGALLFVSGSALALFAATRKVR
Ga0208338_100001075	F012503	N/A	MRDPLRHATAIVLLLTLTNFSFAQRLVCKRPVLAMLKPIPELSYPCDDQLNGYDEKMLKLPARLTAIKTLMSQLSAFSDPTWWSTDIVDLGVCDYTKKTGPLTPDQRHSFLQGEYPFWLFGNDHIRLALISDPCYQTEYGGSNAFVLYRDPSRITVSQVLDGYFSRADNSVNIAFAKLNTQQIVEISTGSGGLTPSLTNYYFVIDPHTHQAIPKNLFNGDHGPTNEISSAMLLSDSRTAAEPLKVIQGQSLARSFIIYVDDANGKIDDNERTLSRKVLRWNGKVFR