Scaffold Ga0209537_1010246

Overview

Basic Information

• Taxon OID: 3300027510
• Scaffold ID: Ga0209537_1010246
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5870
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078879	Metagenome / Metatranscriptome	116	N
F103498	Metagenome / Metatranscriptome	101	N
F103501	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209537_10102462	F103498	GAGG	MGSTESCESQHCRLRTDILCEVQRREEKQDERFHALINELRLDWKETKKEVISIKDTMIQGFIALIVAIVGVYVSYLLLNVNGFF
Ga0209537_10102468	F078879	N/A	MTPDVSDEVEEGYDLLEGIGIVERTESGQYCPTEVGASIIYVVLCKQILGADADDFRSEELQKVMMNRLEEMDLVEQVDDSFIITIEGFTAFFTNLAYDCPYREEFLDWLALATAELAEEMEKL
Ga0209537_10102469	F103501	AGGA	MIKNIVIEGIVTYDDNFDLWRVDDEAIETTISNFENRKVVVTITVI