Scaffold Ga0209537_1009682

Overview

Basic Information

• Taxon OID: 3300027510
• Scaffold ID: Ga0209537_1009682
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6171
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F031138	Metagenome / Metatranscriptome	183	Y
F076220	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209537_10096824	F076220	GAGG	VAKLVDSIPEAAREELETYLNEDLRGAVVTVTAPIVDEDGRIYFDEIILRLEDGRKVAIVPEMRGKWPMLVLEVNTGRGWRNMSVAEDYAEELDELTAAPWRPEPDTVEEARL
Ga0209537_10096826	F031138	AGAAGG	MTKRTNYVGPCATACKPGAGTDAQNDTFDRIIVAAAEHAAREAGLPGRADRMIVCRSCGAPTASSDGICRDCADAMRAERSEALSALCRVHRVRYVEDLPVSALEEMQAEWGRC
Ga0209537_10096827	F004383	GGGGG	MASNDNLLERAFMARIRADEYREALAALQQEFDERPDVIEIKRRIDRCEEERRQCIAQAKAAGISKQGNYLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALDGCCEVEVKETGVSVEYVRPEGSE
Ga0209537_10096828	F003987	GGAGG	MIPALPCGTFSDGDTPAGAFYVAAFKDGDAPHHVGEYRIETVIRALEALQACGYDDVEIGSIFAPDPEHVHLLLIGLDGEARFGDQQLGCIAVLPVGVE