NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209537_1006082

Scaffold Ga0209537_1006082


Overview

Basic Information
Taxon OID3300027510 Open in IMG/M
Scaffold IDGa0209537_1006082 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9276
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053364Metagenome / Metatranscriptome141Y
F079824Metagenome / Metatranscriptome115N
F101423Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209537_100608210F101423GAGMFTKRQPKSIERFRVGKGSPGIKAFAYRILNKPYLDIRIFRGYKEITRIVTPDTGMRQFTVEGIGTFVVPVGDNLLRQYYNKHCIYLNYNIQNSNPGVPVECEKWTEYEYPPLSPEEFQVLLEAQTVADLLSETEKDTKWIWYLLIGGIVLVALIMLLGGA
Ga0209537_10060825F053364GGAGMSDSLNDILVECCILRGCYPLMHRTLHEFNWFCSCVIWGAGPLIDVEIKQAEANGDEDHVKALKDRRNEENAIHERFGEWYSHGSDELIRLAKAFLIYCREQYGNEVDV
Ga0209537_10060828F079824AGGAGGMIYGFFGSIPGCPHNRGNHALRGNGKTLCLTFVGYLDYLAGRHVISNYKTSFSELVSTEKIAEMVINEDIRDTTILISELQLYMNSLGVNTKELRSFVGSVIGQSRKRNTDIHYDTQRYTDVHPRIRVQTDRAFLPRKFHTDGKPCQLDRCNKKHIIYLFQHDPYLERPILKLQADKFGALYDTNEIVALTKD

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