Scaffold Ga0209537_1005066

Overview

Basic Information

• Taxon OID: 3300027510
• Scaffold ID: Ga0209537_1005066
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10716
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009968	Metagenome / Metatranscriptome	310	Y
F079824	Metagenome / Metatranscriptome	115	N
F101423	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209537_100506610	F101423	AGGA	MFAKRKPKSIERFRVGKGSPALKAFWHRILNKPYLDIRIFRGYKEITRIVTPDTGMRQFTVEGIGTFVVPVGDNLLRQYYNKHCIYLNYNIQNSNPGVPVECEKWTEYEYPPLSPEEFQVLLEAQTVADLLSETEKDTKWIWYLLVGGIVLVGLIMLMGGA
Ga0209537_100506613	F079824	AGGAGG	MIYGFFGSIPGCPHNRGNHALRGNGKTLCLTFVGYLDYLAGRHVISNYKTSFSEYVPVEEIACMVVEENIRDTTILITEMQVYLNSLGVNSNDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFLPRKFHENGEPCNLDRCKEDHIIYLYQHDPFLYDEVIRLNAKAFAELYNTDEIIAVPKKKRKTRKGEE
Ga0209537_100506616	F009968	GAGG	MNTCNGCRSHYRERYWKTFEIDFCKRTGDVVGFECPIGCIETEGCVYYERRFVWHEGAIA