Scaffold Ga0255582_1210776

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255582_1210776

Scaffold Ga0255582_1210776

Overview

Basic Information
Taxon OID	3300027507 Open in IMG/M
Scaffold ID	Ga0255582_1210776 Open in IMG/M
Source Dataset Name	APAL treatment+control metatranscriptome co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	572
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	Panama: Bocas del Toro
Coordinates	Lat. (^o)	9.1956	Long. (^o)	-82.1254	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004690	Metagenome / Metatranscriptome	427	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255582_12107761	F004690	N/A	VLVIFQAILLIFSGETSSNRDIFFTEDAAKKFFPASKISAQEIRHQFFLIWSNLTIMAHIMGLRNQSESWKIIILS

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