Scaffold Ga0255182_1007269

Overview

Basic Information

• Taxon OID: 3300027503
• Scaffold ID: Ga0255182_1007269
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3996
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255182_10072693	F090310	N/A	MSSTLRLIADALAAGLQAVAWPVAGTTVERRNWATVDAEAMATPRVFVVPGNAEVSRISRTMMQVDYTVTVFVGRYVQTDSQVDGMLDLADTVMLYVRAHDWPGITWPVGVTSPQTVTIELNPDDALTERNMWRAVITATYRTFEVNALPPPPTP
Ga0255182_10072695	F034165	GAGG	MPVGTVEIVLGKDVTLTGISNARSCTVSHSASEIDVTKLGDTSRKFRKAMIEQTVEIECVDSPGCTIGGTFTLGGTTTGNATYIVTNIGRSEPLDGIVTYTVSGSRTVSA
Ga0255182_10072696	F056554	AGGAG	MAIGLGKDGVSGSAPPFGEGIISATYTEECETVDVSNRANVGTGAGRRVFLAGFTTKTWEIECHDADAVIASLEAANPTGWTVMSVTENIGIDGAVTYNITAREAT
Ga0255182_10072697	F098561	GAGG	VAITLGKDCFIALDGGVIASARNVQLSESARTIEINEFGSRYAAVYSTGYECTVSVELNDPAELGSAFARMHTGTSFTVYGGASGFAFQAVLTGISESDPIDGVVTCTLEGKMTHPSLRA