NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255182_1001436

Scaffold Ga0255182_1001436


Overview

Basic Information
Taxon OID3300027503 Open in IMG/M
Scaffold IDGa0255182_1001436 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12385
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F003267Metagenome / Metatranscriptome496N
F005845Metagenome / Metatranscriptome388Y
F035287Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0255182_10014361F035287N/ASHPSQLVSSNMAVKIPPKKKKGVQKIGRVAGVQAAMMLLEKPYKATQLAEALGMHIRITYRIIDDLRATGHLYSHRCYYWFDPKKNNDLQHLIPIKDPYA
Ga0255182_100143618F003267AGGCGGLIMHQHMMALCNYGLIEQLDEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAYEQATLTEMYKASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELEKVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRKLGEPVREHRWQAEHWIGKAEGMTVYNSCKGWPSPDKFIITF
Ga0255182_100143621F000557N/AMKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPAASLTKRYKAIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAAWLGWFPKKYDGAAHAERAELMKKHAKIGDVWGVVSFFLLSSESYLQILSDYSKHLTKKVQGQ
Ga0255182_10014369F005845N/AMKTTPTDFRRWQLHIRKACATCLTPDHAETISPFRVNWVLLGHVLNAKKA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.