Scaffold Ga0208788_1010050

Overview

Basic Information

• Taxon OID: 3300027499
• Scaffold ID: Ga0208788_1010050
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3489
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208788_10100502	F012016	AGGTGG	MQETLKDKLPEQPFAWSVEEFNIHGDLIWEGILKFRPTEISWVRDLPNKKHYLVITELYKKKESAEKITGVKSYRESTKRLMEAYGGL
Ga0208788_10100503	F006587	GGAGG	MVDSKKYDGTGFILVGLIVGCCITWGIMKYNNTQTKYKMNLKCIQGELYEEIRPNFYVKSHLECFEQRSF