Scaffold Ga0208788_1007468

Overview

Basic Information

• Taxon OID: 3300027499
• Scaffold ID: Ga0208788_1007468
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4284
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011484	Metagenome	290	Y
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F065721	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208788_100746811	F065721	AGGAG	MTKYIANENGDWWEVVEGEGLYLIDTELENIANKMEEEDTNPYQDKFERFIWRYGTEVKLNLTNVEGIRV
Ga0208788_100746812	F011484	N/A	MSRELEQFLNTEAEWVLERLSTGTESADRNYYQGRLDQLAQVRRYLGHPQIMRERASK
Ga0208788_10074683	F018703	GGAG	METIERRIEGAKAQAVRQRNYRRARDRALARLSRDYPNVYRTYLEEEMNVDEDMGKKWLDIAGNTKPRNFRRG
Ga0208788_10074685	F011756	GGAG	MSEPRYLFGDDYAYNGGYEELINCLVCSKEYDRVEYRSDTCSDCEDKIIKRQKESK
Ga0208788_10074688	F006842	AGAAGG	MKSTPAICGDHLVPISECDCVNYLQELKTSAERLVQLTKEREELSK