Scaffold Ga0208788_1003229

Overview

Basic Information

• Taxon OID: 3300027499
• Scaffold ID: Ga0208788_1003229
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7340
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052556	Metagenome / Metatranscriptome	142	N
F063632	Metagenome	129	N
F065720	Metagenome / Metatranscriptome	127	Y
F079983	Metagenome / Metatranscriptome	115	N
F101045	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208788_100322911	F101045	AGG	LAISLLSRDVTFNVFTELQDYTLINSAIENIPQEIKVRIWPRDLIDKTKLRRQNCEVFFIPCITLSWVQKMRMCARLAREAQEPWFGYAHDDTTISSEDFNKLIEARKTVNENTYWIVTNNPKHPEINADIYALINTKNYWAIGGHDENFHMYYADIDFHLRQAQNGKGQIGVCTPSTTHIGSVVLKKLEGLQSIYYKMMLEKDRSYFKAKHPSFDI
Ga0208788_10032292	F079983	N/A	MPATWDLPRSSGLWNQQDIANYNRLPIWMAIQQTKKMQMWSRWKDMFPKIKWKQNMGDILQGVIAENSPIVNQVHRPKNITELPLKTVASTWERTNQSRVKRHNFESPQFNFLPSFRDFRTKQLKFAAEDLSKQIAVGYDFFTRDNVFQNSPFVYIVGNSTAGELPLVNAPAALPTDTSAIKDTAWVAATAAKIGSDENGFLSYRQIQAVASYAKNYLMIPPMEGMQSGAPADNEMSKGKYILVGGSEIYEGLAFDEHVLNTKPLAMNLLNSSFQGAIGPNIVFREEFYPLRFAEDGTMPAPEIELLLPDSGYSTPNATRQTVINPAYASAPIGVAFLIGYNPYEQIDVGPPPSEFTGASINGKRFNQLTWNGEVRLTDNVLVNYGSNNLDTNKYGEFLQLIADTVLGIIGNTPRNVIPILYRRQIAPSLFV
Ga0208788_10032296	F052556	N/A	MIKLELTPEEANGVLQLIDIAIKAGGIANAKVGLPIFDKILGAANASGIPQAPAQAELPLEK
Ga0208788_10032297	F063632	GAG	MKSAIEFVGNFFQNNGHLRGALYFSIAALTPMSAAFVEWASQDGPKNWYEVIALILGSIISGLTAIRAYLDNHLSKTKETK
Ga0208788_10032299	F065720	AGGA	MSFLSDLIMKLLRWFYELSQKDTPCEDAKKDDKLKQNLLARIDDHERKLLIESDLRAKRTAAEVSRAGQSPRVDFRLKRPSGVVKK