Scaffold Ga0208788_1001504

Overview

Basic Information

• Taxon OID: 3300027499
• Scaffold ID: Ga0208788_1001504
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11270
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (35.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F001345	Metagenome / Metatranscriptome	718	N
F006503	Metagenome / Metatranscriptome	371	N
F007111	Metagenome / Metatranscriptome	357	N
F021095	Metagenome	220	N
F025272	Metagenome / Metatranscriptome	202	N
F044457	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208788_100150412	F044457	N/A	MKAKTYIFCHDTDIVKQCEAEDRFKDFFPYTWVMLGFKDFEGMAGLDHIVARDEADNIESHRNLVAWTGWYALAKNGYIKPGDVVNLFEYDLTRNGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGAKEFYQPVVPVTSNYTLTWDDSYLDLTIACIEQKLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF
Ga0208788_100150414	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMSAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYNGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAGELT
Ga0208788_100150418	F007111	GGGGG	METTILANGQPVGKFGSGSMKGIDQTALEGIGSIVGPKGGGKSPTYDVLVKWVARVIELAKKNLEAANANAGGTLSASIDFGEIELTAKEIVVTVVANPYWKYVDQGVHGRSSSYISARDSKFRYGNKIPPPQAIADWIANKEIAVTPTYSRKLKRMRTKQEQGLVLGRTMAFAIRERGVEGTKFMSNALSPEMIDILVNTIAETLGKSISVATKL
Ga0208788_100150419	F021095	N/A	MATTVLSGSPQVATPVYNKMLFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPSTNFGFFDVAKVVETLIAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTVSGVMGFAGNLEQLEFQDWSLSPYFRIGSSFNSVKPLTTPSAFTVYRGGKAWLSINATKFSAVSPNDTYLVSGRVAYKGVNYDIAVSPSLSGTTDFNIQRFGCGPAQLSGTIAALSGAVEGDSYTVQFLGNQGLGSVITTFAFGPCERFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0208788_10015043	F001345	N/A	VNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQDQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQEEGKDYDSLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIESNGYTGFSNPD
Ga0208788_10015044	F025272	GAG	MDILVFPILISALATLAVVEFRVLPGWFYALPFVKRKPFSCMTCFGFWLGVALTLPTCQWYLAPILGLASSATAIIIREWTFK
Ga0208788_10015045	F006503	GGA	MTNEQFIVAQKHRKYWDQYVASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAEANQNTINHSLNAPANPEQ