NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208199_1002619

Scaffold Ga0208199_1002619


Overview

Basic Information
Taxon OID3300027497 Open in IMG/M
Scaffold IDGa0208199_1002619 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5321
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032904Metagenome / Metatranscriptome178Y
F041550Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0208199_10026192F032904GAGMGAHALDLPQSPRDAVFRAMETIVRQNATFQRIVKPVAFRTWQGKPEDAKEFTFEIAPAMRWTPMNTGEQFRTPDTMSGDLLINCEILLKGTNVSDLTNFWWMVARCFYPPSSSPGITRNQVIQVLQTAGARSGLVLFSQPAFDPGPDGVWLAGQGQIKIEIQSQLNT
Ga0208199_10026193F041550GAGGMGISLELVQGTARDFPFQVQNPDGTVPTGIFLGTDTLNATVWAGSNETPLLTPAAAWINATAAQYQVTLQNTDSSSLAPGQYYLQAYATRIGIGSAPTRTTALLPRGTSLEILAAPGSSFTPRPTYISVTDIRKIAPWIDDLQVPDSNFGFDNQLADSRDWLDEMTLRNYRGGNVSLLGYHGFALDAWYTGGGRRTALTNRWLFAALQQNQLLVTPRVKQVCAYYALSRICESMITKSGQYVALASRFRFEAESLLASTTVEIDVNGDGFGEVPINFSSTNTLWA
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