Scaffold Ga0208199_1001772

Overview

Basic Information

• Taxon OID: 3300027497
• Scaffold ID: Ga0208199_1001772
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7038
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026103	Metagenome / Metatranscriptome	199	Y
F057592	Metagenome / Metatranscriptome	136	Y
F081647	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208199_100177211	F026103	GGAGG	MTDCEQLAGELKVLEELLKKTSTEHKRQEIIDRIDQIKAEQQKHGCLEATNSQ
Ga0208199_10017725	F057592	AGGA	MAHTPHDTKRVIEKAFIVRLFADGGFRVEGPFPPLQVQSLIDTNECQAWLGDPALFAIWGREPIASISQLFTLAPEITEIASRLAHKQYQPLKANHYRAQHARHWQGEKGQTP
Ga0208199_10017726	F081647	AGGA	MKGHRMHKKRLSAPERHAIEAALKGEPFPGLVYRRGEFSIAGNMLVLPDIGRIPIPGDIPPKGRIVSVTLQEDGDGWSATVEVEKDGE