Scaffold Ga0208199

Basic Information
Taxon OID	3300027497 Open in IMG/M
Scaffold ID	Ga0208199_1000350 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027497 Open in IMG/M

Scaffold ID

Ga0208199_1000350 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19086
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (94.74%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

19086

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (94.74%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.1318	Long. (^o)	11.881	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.1318

Long. (^o)

11.881

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F006575	Metagenome / Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208199_10003505	F006575	GAG	MEHEREMEHSMTEQERAISAAMATSPYLSLRQAVRPAILAHWLLASDQERAGKLAAECEDLLFLTRELLKAAGRVRILAEPAPSAELPDLPDLPDLPESGGDRRAQLLDAYAEAGLLWAKVVGCSVALAGALIDRGEWDDVRRLAGFLAGAGEESAAADLRIQLGKAVFQTHREQLQGISNTMSPAAISAAIDALRAVLRDVPEEFPDRNREVNRFLTPLASAIHAIMKDQDIDIPFTSRVEHIATGGVAKYPDLVTMSLDELAAEFEGTCR
Ga0208199_10003506	F001698	AGGAG	MAGVINDIEALAEFRAQLMRFNHDLAENFATIQGHWRELGEVWRDDMYRLFGEALEEVTPGIAQYLSATEGHEAHLAALIERLRAYLETGAGAGLGVGRPEAGRGTERRDQRPR
Ga0208199_10003507	F002850	GGA	VTSVHADIDALKGLREALVRYRHAQREVASRGEEEIKVVRASLEAKASRWRAQLEQCQAEFGACQERAAQAAAGSAADGPVAGDDPVDCSGYAQAVEQCGERLEQIRRWQQRIDAESSEFQGTASRFGDLLENDLPRTEEHLLALIRSLEAARRVQAPGA
Ga0208199_10003508	F004352	N/A	MVTRPDRDGDQQLRLLDDAWDKASQHWHDGMTRQFDTDHLTPLLRESRGYLEALRKLMDMLDAAERDTEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208199_1000350

Overview

Ecosystem & Geography

Associated Families

Sequences