Scaffold Ga0208199_1000184

Overview

Basic Information

• Taxon OID: 3300027497
• Scaffold ID: Ga0208199_1000184
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25757
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000562	Metagenome / Metatranscriptome	1023	Y
F017179	Metagenome / Metatranscriptome	242	Y
F027504	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208199_100018416	F000562	AGTAGG	MPDDNAHAADDTRKLRARFPRWGILFDPLESMWVAVRGKRTLVAASSPEKLTEQVEAAARGEAGPDEGDKTQGWRALRKHGRG
Ga0208199_10001845	F027504	GGAG	MVKASQEVLRCAYPGCENELRPGEEGAAEHGYFALPDPVTGEPRLALTTLRWR
Ga0208199_10001847	F017179	AGGAGG	MKQIQRAKRHRGSACGRQEPLAIDPRDPDIVHAHRIARRSSRPGSGHARWISAGGRGTKVPA