Scaffold Ga0255093_1017417

Overview

Basic Information

• Taxon OID: 3300027492
• Scaffold ID: Ga0255093_1017417
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1606
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005585	Metagenome / Metatranscriptome	395	Y
F013317	Metagenome / Metatranscriptome	272	Y
F056187	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255093_10174172	F013317	N/A	LIEKKKWDYLADIRARTGAKTLYINATPQGIYQFDLGALIEPDWVLKSLPVTTDFSNKAHSERLCGFLDIRLAELLLV
Ga0255093_10174174	F005585	AGGGGG	MATRGTIFYAFSKSVRHSVFSSETHLTWRLLLSRPNSQECWKVQSARIRISISLDMPLSWVDADFLHQKIGTTLSLTRNHNSNQYCDYCKYRWGQQKGEWHLKARTPAVWKVQSETPTRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISDFAGREKLDVELPR
Ga0255093_10174175	F056187	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADNHPWTTGLS