Scaffold Ga0255095_1000560

Overview

Basic Information

• Taxon OID: 3300027489
• Scaffold ID: Ga0255095_1000560
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18564
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012105	Metagenome	283	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255095_10005603	F012105	GAGG	VAGVAATGSRTDRGCGVIPLAIRRHSLQDLTLGQSVMLTVPHCEERQIRRGVGTLNAERSDGMRLKTLRTPDGLRVWLVECVDVADYPEWQTGKSKRFPGRDPDAVQKAVVKLNEWARVMRRSYRFRVVVRDSVPIVLKMPKNKTIRIKREAELLRIVKAVERLRAGQGTVVRDVERRDIVRAKWRCKKKGIRFVVRHIGESVWNVQRVSE