Scaffold Ga0209247_1005792

Overview

Basic Information

• Taxon OID: 3300027468
• Scaffold ID: Ga0209247_1005792
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1600
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003291	Metagenome / Metatranscriptome	495	Y
F007113	Metagenome / Metatranscriptome	357	Y
F010916	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209247_10057921	F010916	N/A	MVVDTIKSDLYELIQKHDWSYMMSDSHSVWEAGMIEDKEIQAKIHALCAIHKEDAEELYIFTKYIAGPDYTDSDKNGNGLKYRVIDGWFKPYIDKVN
Ga0209247_10057923	F007113	N/A	MKLDLTPEQLKTVEIALCELFNSDGWTWHRSMEENDKIADRAQYLLHVIESYNKNNKK
Ga0209247_10057924	F003291	N/A	ELAALMTAMAGYINVKRKQGRATGIESVVFNKVCDALLLSNYMNATVIDRGNGKMGVAEYKMSEAQLDAMYESDVRAHS