Scaffold Ga0209247_1003133

Overview

Basic Information

• Taxon OID: 3300027468
• Scaffold ID: Ga0209247_1003133
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2124
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F019478	Metagenome	229	Y
F024555	Metagenome / Metatranscriptome	205	Y
F053288	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209247_10031331	F053288	N/A	MITIKNYNSDVNLGVFYGWDMKYAMEDKDFYSFEFEHRKEQKRVYVLVHRNKLKSKKRAKHLPINGDLHEVYIQDMVSDKWRRTVNLAKTSLNKSTF
Ga0209247_10031333	F006547	GGA	MKWIFIFLFPVLVSAQIYDTTYQMVYYQKSLIKKGKVELYGYTSYDLWWADESGIGFLYTIPNKRKKKTKRK
Ga0209247_10031335	F019478	N/A	MILKIKNKDRMVGTIYWNRRFKCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMRCNQHLVTAKWFGDWKNVTKTFGDALKKQF
Ga0209247_10031336	F024555	N/A	MLTIKNIEKLYKQDVSNWRIGKVLTLDSSYLIQLYKHNRMDTKQVNIERTPIGEGDTALYELWFWADDSGTAKPIRRLLRKCDFELGPSYVIKNIENMMIL