Scaffold Ga0207624_100666

Overview

Basic Information

• Taxon OID: 3300027453
• Scaffold ID: Ga0207624_100666
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-D (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1320
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.42
  • Long. (^o): -89.33
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024659	Metagenome / Metatranscriptome	205	N
F068402	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207624_1006662	F068402	AGG	MRRSLLILLALGIGTLVTAVTAALSYFAFQTGAEWVSKVLFWPNTLMQSLVPLHNIGTPEHPFYEGTPVNIAAFFVSFPLGILVYSAVAYAFVRRRQYRFQATQQT
Ga0207624_1006663	F024659	AGG	VRYWITILIALVVIGIGSIAAVVLLNPLRRSETDIRGWLLHQAPLGSSRQEVMVLVARRGWKFHPEYRGRFINKSVPVGGFGAELGTYLGVRDVKVDAYWKFSGSDNLDEVYVNKWKEGF