NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209421_1067587

Scaffold Ga0209421_1067587


Overview

Basic Information
Taxon OID3300027432 Open in IMG/M
Scaffold IDGa0209421_1067587 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015781Metagenome / Metatranscriptome252Y
F056758Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209421_10675871F015781AGGMNSAVDTMVAAPASSEAQLPSRVLEIRPEESKLVCVGADGREFALSRLIGS
Ga0209421_10675872F056758AGAAGGMTEKGLSDSGCRSAELRYEWQSFLGLLPVLDLRPTDLVLYQRCQTAVWRSRKSAISRTDLQQAAGLGFQAETLGFDLLIAQLVRDRILEPIVSSPFHFQIRRWNWTNPESVYAADDRLSLIAISREEQTARFRMVGLLSARISNPRLPEKRVQQIRKERDELERTTR
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