Scaffold Ga0209340_1006400

Overview

Basic Information

• Taxon OID: 3300027419
• Scaffold ID: Ga0209340_1006400
• Source Dataset Name: Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4935
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location

• Location Name: Espanola, New Mexico, United States
• Coordinates
  • Lat. (^o): 35.992
  • Long. (^o): -106.0797

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038519	Metagenome	165	Y
F060548	Metagenome	132	Y
F071903	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209340_10064002	F060548	AGGAG	MSTVTNRPKQRRVTDFVDMQVATLIKHHADEELCIEDLVAVALKEMPSFGWTDDKIRHSVNRLEKRGKMASKYVVRRKRLCRVPYLI
Ga0209340_10064005	F071903	AGGAGG	MNRMEQAAARREVELQEAFGHLEYFKRTAQALDQAMKAMAKDLQVCRKNEQIWEKRIAKMQEKA
Ga0209340_10064009	F038519	AGGAG	MSPAEHAAAKRQAELQEAFGIIRQIEPNAEIIGRECNPFSDQILAGQLPYRIHVDLVDGMPQLPADVGLTWPPGEMEGIQFGNLECREYFVWAESEKAALRKPATLNKAVQSYSPKAAAAEEL