Scaffold Ga0208022_1007474

Overview

Basic Information

• Taxon OID: 3300027418
• Scaffold ID: Ga0208022_1007474
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2683
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F015472	Metagenome	254	Y
F033432	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208022_10074746	F015472	AGGAG	MAHTYLNQGGTRWASDSKILVTGFFNGKRYYKMRKPMYWEQFGNFARCYVRVGDSVFRGATEDNNGVIELKLEKCYRVR
Ga0208022_10074747	F033432	AGG	MSNYRIKFLSLWSAIMDEERWHKFESQACIPSCKGWNAWAPLCECGSNFCTFKPSGNAEDMILAIEVRPVEV
Ga0208022_10074748	F003750	N/A	MNEEILHRVMQVAIYSGGIVAFWQITKHMPKALYTLLECIIVMTFSVLLLTPFSMIIEYILGGNIETTMMFVGCLATVSLLSTMWMVMVQSSRELQGKK