Scaffold Ga0208022_1001409

Overview

Basic Information

• Taxon OID: 3300027418
• Scaffold ID: Ga0208022_1001409
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6924
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013085	Metagenome	274	Y
F016809	Metagenome / Metatranscriptome	244	Y
F021108	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208022_100140916	F013085	N/A	MDILSEIIEISDEMVNSLEEDGFFEEHQFIDRIPLKRALQIAMQRKWEQEDDMLLTDKEFLEVCQGVSNKSIGKTIEDLVDKGALNMSVNEDGEILYSANKDFQFDKDYDDEFQQD
Ga0208022_100140917	F016809	N/A	MSKTNEEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKSVQSHSIFPDEVQYDDEYYKSSYLPTPDEEAENYKQTKQNGHT
Ga0208022_100140919	F021108	N/A	MAQAVTTQMNEFRRLEDGRIVLDGLVWSQYAEKAIEVIDEDNGFKVFNIKLDGVSYYPVGYDKRKKK