NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208965_1002253

Scaffold Ga0208965_1002253


Overview

Basic Information
Taxon OID3300027406 Open in IMG/M
Scaffold IDGa0208965_1002253 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7867
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005010Metagenome415Y
F016811Metagenome / Metatranscriptome244Y
F031255Metagenome / Metatranscriptome183N
F050369Metagenome / Metatranscriptome145N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208965_100225313F050369N/AMKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERASHLAVLNVMRLVNRDEEFENEAHMTGIVMSSFRYAILNSYSNSLSANEKNLEVRNESEVTYGDGDDEYSKYQANAIADTKEIDNLIDVVRDYAETNLPYLQRRALMECVIGESSMKELATDTDTSVRKVHLAKQKAIRRIKKFIGVLNENEEKYGKKEADGKYVSPSRSKLQIAIQLEPVRKDETRERNYSKAMSFVNTPPKV
Ga0208965_100225320F005010N/AMMRKRRHIREIQKYLEMLMIDQVNITLHASRFGWSEDIQNQLTNSALLIRKYQRRLRLIK
Ga0208965_100225321F016811N/AMSDEGQMIYDVGVRLAWKKKRGNGYTNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKSVYDFHITEEFYRKEISNSFSHKEEDYSKEFGE
Ga0208965_10022538F031255AGAAGMVKYFNEVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGVSNPNVLTVWDNNRKRYTSLIPDNIVRITTNKRRYLKTDEFLIENYE
Ga0208965_10022539F077286GAGMSKLTYTVEWEGDVANYKQDFETIEEARMAMIMHHKRNAVMKVGILKED
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.