Scaffold Ga0209904_1000294

Overview

Basic Information

• Taxon OID: 3300027394
• Scaffold ID: Ga0209904_1000294
• Source Dataset Name: Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4757
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost → Thawing Permafrost Microbial Communities From The Arctic, Studying Carbon Transformations

Source Dataset Sampling Location

• Location Name: Sweden: Kiruna
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006683	Metagenome / Metatranscriptome	367	Y
F068013	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209904_10002947	F006683	GGAGG	MNRPDRADVRQVNVKVNGITFESVWLRRSSGANDFDIVIDDPQIGRFALTPAVPDLELRDKDSDWRQVTLDELKKILADDELADAAEEPQASETAERESFNRLVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFGSNLFMVMSVPKARACLQRAGFQAKFDSETVLLDGCNGQAVQLIQGKYRLPRAKS
Ga0209904_10002948	F068013	GAGG	MSDKHKDERFNESLVRCRDRVLTSWACASLLRPDLSPAGKEKLAKNILKMAESKDHRLGITPAQAQEIVLSNVQCIAKNCPLLIFADPLARELNAFFHEDN