Scaffold Ga0209904_1000014

Overview

Basic Information

• Taxon OID: 3300027394
• Scaffold ID: Ga0209904_1000014
• Source Dataset Name: Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14710
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost → Thawing Permafrost Microbial Communities From The Arctic, Studying Carbon Transformations

Source Dataset Sampling Location

• Location Name: Sweden: Kiruna
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010268	Metagenome / Metatranscriptome	306	Y
F020407	Metagenome / Metatranscriptome	224	Y
F026653	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209904_10000144	F026653	AGG	MLRRLETFAFFLAMMLAVALEGACVYWMSGHSARYPTPDSSLNFAGGEWTGFALPQGWLLGALLVLIYRITVMLRPPKRWGHDDLLHNQRAFLRLWRWTMALVAMQGLALYLERIVATS
Ga0209904_10000148	F020407	AGGAGG	MVKQRFLTHFKPWLFAVIRVVGPIVGYQLFDKARTYLQYAPLNSVDVLLGAVVALLMAGLLCGLWAWGEWCWFKLQRLRGFCAELKRAFRNHWGPKAVRTSQPVTRNMA
Ga0209904_10000149	F010268	GGAGG	MTTMIAAPPEASQVTNRSTSRGTRRGRPATEEESASGARFFLSKSGANGSSPELGLELPNEGEAKVEALKLGVTYYSVQEWRPVPDFGGKNPELKREAVTRKGTARETWAVRVL