Scaffold Ga0209867_1005330

Overview

Basic Information

• Taxon OID: 3300027393
• Scaffold ID: Ga0209867_1005330
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1799
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F040534	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209867_10053303	F040534	AGGAG	MNTDKSGEGRILSLSTLGEPMSEEDFEDKMNTYELDQQYAEYIMEHRNVGNGEMLIRFMERGELYEDFKEHIMWGDK
Ga0209867_10053304	F009140	GGAG	MRLNLTHRTLLKRLSSGPRTMLEMTHSATDNNAVSYHYAKYLPELERFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSTIEKYDGKELRKNVFRRGCYDFLQLPSRFGDTFVPRKTPT