Scaffold Ga0209867_1002809

Overview

Basic Information

• Taxon OID: 3300027393
• Scaffold ID: Ga0209867_1002809
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2493
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F024785	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209867_10028093	F014620	N/A	MFAPSIGLGGTFERPAINRDIVIIAREAKQTSVDAAVKAKPKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGVRRLTRAGNQAIVWRCV
Ga0209867_10028094	F013413	GAG	MTENEYNETFDMQMEKEHQETMRRMQEFRLIGEQISKMPDMSPKVLEIEVRYLMGIISELETRVKDLESEARRLEMLLTRAN
Ga0209867_10028096	F024785	N/A	LKPYTVNAAPAVTKPLAGMNAWLTRAIKHSDKSLWNNGSWVVREVRNKPGIMSNHAKGVAVDLSYQWQSAKNRGRQDGRKVSRAFINKCLEHADTLGIELVIDYAIKRSWRCDRATWRAFECEHGDWFHIEINPVMAHSEQLAEQAWNKVFGLIPAVIKKPV
Ga0209867_10028097	F003213	N/A	ANLIMTNKKINRSHRQIGDQTTKGGLLGIMIYTMSRNNVDPVLIGLIVPVAASVLAWVSTKIGDPDLACMFIPDDKKTD