Scaffold Ga0209867_1000292

Overview

Basic Information

• Taxon OID: 3300027393
• Scaffold ID: Ga0209867_1000292
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10283
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059963	Metagenome	133	Y
F065430	Metagenome	127	N
F067739	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209867_100029212	F065430	GGAGG	MHPFKFLALVAFAYFSLVVVFGSSSDSPPETTIKVSQTVRIVPLTDEQIADQEALIAQMIAEENATIYDEPVETSTTFPQLAQIDPDTKCQEWLPLAVEMGWPNRTEVLQTLGRVMWKESRCQSISADSEVFNGSDHGLTQINQIHEEWLSEMGWTLDDMAIPSSNLRFAFLLWNSREEAGKCGWQPWSISC
Ga0209867_100029217	F059963	GAG	MNPDNVFTEWMQPIRPLRVLFQSGDSDNPNRHYIHIFALRTGGLECEYLSIDGIFIQARSKSVMFAETLIDGNWLRLGA
Ga0209867_100029218	F067739	AGG	MIQYQVICMHRVGNPRKLTESQASELHTNPHVVMTLLNQDQHLDRYVKVIVDGTVAGYQTYRQGKRVTIEDIV