Scaffold Ga0209867_1000260

Overview

Basic Information

• Taxon OID: 3300027393
• Scaffold ID: Ga0209867_1000260
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10914
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F042804	Metagenome / Metatranscriptome	157	Y
F061791	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209867_100026019	F061791	AGGAG	MTDWTSEEDEAFNMIEKNSNLGKQILRANKSSGMDCCTYDCVQGRDCPVRTKTLEEVASVFDKMPFGDTASSFAIFVRNMKGKL
Ga0209867_100026022	F000166	N/A	MANIPTPKDAEVFAQSMKKWQQILNLYDWRVEKGSKPAKQAMASVEFNQSARLATYRLGDFGAEKITPESLDMTALHESLHIFLHDLMAVSQDPKSSQDEIEMQEHRVINLLEKLLKDSNGFT
Ga0209867_100026027	F042804	GAGG	MELSRWLTTNGDNCSSTDLAGIWNKLAEWAGVADSAELRAKVLYYYARAREREKK