Scaffold Ga0209867_1000190

Overview

Basic Information

• Taxon OID: 3300027393
• Scaffold ID: Ga0209867_1000190
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14188
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (30.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067743	Metagenome / Metatranscriptome	125	N
F073464	Metagenome / Metatranscriptome	120	N
F085616	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209867_100019019	F073464	N/A	MNTKNWVIKIEIAIDENSHPRKFIPDAIADCLNFEEGEDIIDYDFVCLD
Ga0209867_100019039	F067743	N/A	MTLTAVPIEIAAELSQKCLDYITELVEENYVLDDILQFITEYNSDDFINYYVDYVEQGEKVGYDVVDAFLQENDISDVTRVEDAFIGNYDSEAQFAEDYHNDIMDVPSTLVIDWKETFYQSLSYDYVKGHMKGYVFQSNF
Ga0209867_100019040	F085616	N/A	MSFTKTQEQKQERWARIAELEVSKRVMTSAQSISARNKQKKATLLADKAENLLNSLTQSVRVSKAPMGTNPLTVEDKAPVPDANTFLPNRKKIDQLAVKANQIIDDILKG