Scaffold Ga0209867_1000090

Overview

Basic Information

• Taxon OID: 3300027393
• Scaffold ID: Ga0209867_1000090
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26419
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (32.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001806	Metagenome / Metatranscriptome	631	Y
F045692	Metagenome / Metatranscriptome	152	Y
F075716	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209867_10000901	F045692	N/A	MTTTQLTQANLAKLNVLKLYEHYAAIERSLPLLTPESQDLAQSELEQCLALRSEKIDRLYYAWAHHEDAV
Ga0209867_100009025	F001120	N/A	MTKKSPINFDRTIAGVNITENGIKSYTKSFQLGPFQLTLNARESGVHGSISLPGTGISKRNIKII
Ga0209867_100009027	F001165	N/A	MSTMSPLNDAPKPRIPDAIDKQRLQAMQLVAKMKESADKYGVGFVGGFVSPDGQKFMMTNMDEADTNALLPNDLK
Ga0209867_100009042	F001806	N/A	MDAGVRQKRVEALEKIKEVALERAKEGADSFEVRDFVTEAKKELAYQLPDEEAFRKAVKATQAYKGSKES
Ga0209867_10000909	F075716	GAGG	MTTFNQFKFEKTDNNSTITLEVKADGCQEIVDEFISFMRGCGFMDVNIYDAMENAVEEHTSYKAHLEKATELGMQDPIIKLGADPFNLIN