Scaffold Ga0209867_1000065

Overview

Basic Information

• Taxon OID: 3300027393
• Scaffold ID: Ga0209867_1000065
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32008
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (51.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045557	Metagenome	152	Y
F048175	Metagenome / Metatranscriptome	148	Y
F081075	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209867_100006510	F048175	GAGG	MSSGSFEFRFRHRNEEATWYKNPNTKFALPDEDVEIKCDDPYLNENQFLEMVRRFFIACGYTEQQWKDALKVHLKEVETE
Ga0209867_100006533	F045557	N/A	MKTFKQFCIEAYQIQELFGFGETPKPKPSNKVLAYKNYQSGVLDKDTGKFTQRTHSDEEQQRYGWKPVKVSSYSKADTPGPKTASGHKFDDTQRLVAVPYKYKENEVPKGVWKGTPSTPFGTKMDLTTKPMGTATKVVKTSVQDTGNFGRAGDTNKEVEMDLSLRTAKDLAPVSTANEFGKRMVYAKVSPSASK
Ga0209867_100006536	F081075	AGGA	MHLHIKKICNNTIQQHINRMCDLCEEGRVRDAECIYSEIRDWVIQKENLEVLSLDYINGYFMDF