Scaffold Ga0209680_1045770

Overview

Basic Information

• Taxon OID: 3300027392
• Scaffold ID: Ga0209680_1045770
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius loisae LIZARD ISLAND.1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2460
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038117	Metagenome	166	Y
F043796	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209680_10457701	F043796	GGGGG	MQNLDRFYTTSDFDREYLRKETRYQKSERHVISSDSSRVQPHKSGELWSTIHKVVHVSLHPPKSTFSTDYISAPKGCWLLKFLHVLVFDQALVAHIAIGVGGPLKNFKG
Ga0209680_10457702	F038117	N/A	MSVYNFGHSVLTVTKLYQGTWLEAGVIKWTLILQGVPPTKFGRAKNVQNSARFLTTFDFDREYLRNGSTYRKSEKYLVNYISSPIRQEILVNFGSRNKKL
Ga0209680_10457704	F038117	N/A	MSAYNFGGSGRTITKPYQGMWLEAGVIKWTLVLQGVPPTKFGRAKNVQNSARFLTTFDFDREYLRNGSTYRKSEKYLVNYISSPIRQEILVNFGS